Index

A

acceptance_rate() (dendros.MCMCRun method) (in module dendros) acceptance_rate_trace() (dendros.MCMCRun method) (in module dendros) alpha_interval (dendros.RhatResult attribute)

apply_state() (in module dendros) attrs (dendros._collection.DatasetProxy property) (dendros._collection.GroupProxy property) autocorrelation_function() (in module dendros) autocorrelation_time() (dendros.MCMCRun method) (in module dendros)

B

base_parameters_file (dendros.Likelihood attribute)

C

Chain (class in dendros) chain_index (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute) chains (dendros.MCMCRun property) chains_used (dendros.RhatResult attribute) ChainSet (class in dendros) children (dendros.Likelihood attribute) cholesky (dendros.MVNFit attribute) close() (dendros.Collection method) (dendros.ModelCollection method)

Collection (class in dendros) concatenated() (dendros.ChainSet method) config (dendros.MCMCRun property) config_path (dendros.MCMCConfig attribute) converged (dendros.Chain attribute) convergence_step() (dendros.MCMCRun method) (in module dendros) corner_plot() (dendros.MCMCRun method) (in module dendros) covariance (dendros.MVNFit attribute)

D

DatasetProxy (class in dendros._collection) direction() (dendros.ProjectionPursuitResult method)

display_label (dendros.ModelParameter property) dtype (dendros._collection.DatasetProxy property)

E

effective_sample_size() (dendros.MCMCRun method) (in module dendros) eigenvalues (dendros.ProjectionPursuitResult attribute)

eigenvectors (dendros.ProjectionPursuitResult attribute) emit_parameter_files() (in module dendros) eval_time (dendros.Chain attribute)

F

files (dendros.Collection property)

G

gelman_rubin() (dendros.MCMCRun method) (in module dendros)

geweke() (dendros.MCMCRun method) (in module dendros) GroupProxy (class in dendros._collection)

I

index (dendros.OutputMeta attribute), [1]

K

keys() (dendros._collection.GroupProxy method) (dendros.Collection method)

kind (dendros.Likelihood attribute) (dendros.PerturberSpec attribute) (dendros.PriorSpec attribute)

L

label (dendros.ModelParameter attribute) latex_summary() (dendros.ProjectionPursuitResult method) leaves() (dendros.Likelihood method) Likelihood (class in dendros) likelihood (dendros.MCMCConfig attribute) list_analyses() (dendros.Collection method) (dendros.ModelCollection method) (in module dendros)

list_outputs() (dendros.Collection method) list_properties() (dendros.Collection method) log_file_root (dendros.MCMCConfig attribute) log_likelihood (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute) log_posterior (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute)

M

mapper (dendros.ModelParameter attribute) maximum_likelihood() (dendros.MCMCRun method) (in module dendros) maximum_posterior() (dendros.MCMCRun method) (in module dendros) MaxResult (class in dendros) MCMCConfig (class in dendros)

MCMCRun (class in dendros) mean (dendros.MVNFit attribute) ModelCollection (class in dendros) ModelParameter (class in dendros) multivariate_normal_fit() (dendros.MCMCRun method) (in module dendros) MVNFit (class in dendros)

N

name (dendros._collection.DatasetProxy property) (dendros._collection.GroupProxy property) (dendros.ModelParameter attribute) (dendros.OutputMeta attribute), [1]

O

open_mcmc() (in module dendros) open_models() (in module dendros) open_outputs() (in module dendros) outlier_chains() (dendros.MCMCRun method) (in module dendros)

output_root (dendros.Collection property) OutputIndex (class in dendros) OutputMeta (class in dendros) outputs (dendros.Collection property)

P

parameter_labels (dendros.ProjectionPursuitResult attribute) parameter_map (dendros.Likelihood attribute) parameter_names (dendros.MaxResult attribute) (dendros.MCMCConfig property) (dendros.MVNFit attribute) (dendros.PosteriorSamples attribute) (dendros.ProjectionPursuitResult attribute) (dendros.RhatResult attribute) parameters (dendros.MCMCConfig attribute) (dendros.MCMCRun property) params (dendros.PerturberSpec attribute) (dendros.PriorSpec attribute) parse_mcmc_config() (in module dendros) path (dendros.Chain attribute) (dendros.OutputMeta attribute), [1]

perturber (dendros.ModelParameter attribute) PerturberSpec (class in dendros) plot_analyses() (dendros.Collection method) (dendros.ModelCollection method) (in module dendros) post_burn() (dendros.ChainSet method) posterior_samples() (dendros.MCMCRun method) (in module dendros) PosteriorSamples (class in dendros) prior (dendros.ModelParameter attribute) prior_sigma (dendros.ProjectionPursuitResult attribute) PriorSpec (class in dendros) projection_pursuit() (dendros.MCMCRun method) (in module dendros) ProjectionPursuitResult (class in dendros)

R

R_interval (dendros.RhatResult attribute) read() (dendros._collection.DatasetProxy method) (dendros.Collection method) read_chains() (in module dendros) read_parameter_file() (in module dendros)

redshift (dendros.OutputMeta attribute), [1] resolve_parameter_path() (in module dendros) Rhat_c (dendros.RhatResult attribute) Rhat_c_max() (dendros.RhatResult method) RhatResult (class in dendros)

S

scale_factor (dendros.OutputMeta attribute), [1] sfh_collapse_metallicities() (in module dendros) sfh_times() (in module dendros) shape (dendros._collection.DatasetProxy property) simulation_kind (dendros.MCMCConfig attribute) state (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute)

state_indices_for() (dendros.MCMCConfig method) step (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute) steps (dendros.RhatResult attribute)

T

table() (dendros.OutputIndex method) time (dendros.OutputMeta attribute), [1]

trace_galaxy_history() (in module dendros) trace_history() (dendros.Collection method)

V

validate_completion() (dendros.Collection method)

velocity (dendros.Chain attribute)

W

write_parameter_file() (dendros.MCMCRun method) write_parameter_file_to() (in module dendros)

write_parameter_files() (dendros.MCMCRun method) write_reparameterization_config() (dendros.MVNFit method)