Index

A

abscissa (dendros.PairedPredictions attribute) abscissa_name (dendros.PairedPredictions attribute) acceptance_rate (dendros.ProposalSeries property) acceptance_rate() (dendros.MCMCRun method) (in module dendros) acceptance_rate_trace() (dendros.MCMCRun method) (in module dendros) accepted (dendros.ProposalSeries attribute)

alpha_interval (dendros.RhatResult attribute) apply_state() (in module dendros) assumed (dendros.InflationResult attribute) attrs (dendros._collection.DatasetProxy property) (dendros._collection.GroupProxy property) autocorrelation_function() (in module dendros) autocorrelation_time() (dendros.MCMCRun method) (in module dendros)

B

base_parameters_file (dendros.Likelihood attribute)

by_chain() (dendros.ProposalSet method)

C

center (dendros.JacobianFit attribute) Chain (class in dendros) chain_index (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute) (dendros.PredictionSeries attribute) (dendros.ProposalSeries attribute) chains (dendros.MCMCRun property) chains_used (dendros.EnsembleDriftResult attribute) (dendros.RhatResult attribute) ChainSet (class in dendros) children (dendros.Likelihood attribute) cholesky (dendros.MVNFit attribute)

close() (dendros.Collection method) (dendros.ModelCollection method) Collection (class in dendros) concatenated() (dendros.ChainSet method) config (dendros.MCMCRun property) config_path (dendros.MCMCConfig attribute) converged (dendros.Chain attribute) convergence_step() (dendros.MCMCRun method) (in module dendros) corner_plot() (dendros.MCMCRun method) (in module dendros) count_variance() (in module dendros) covariance (dendros.MVNFit attribute)

D

DatasetProxy (class in dendros._collection) degree (dendros.JacobianFit attribute) delta_mean (dendros.EnsembleDriftResult attribute) direction() (dendros.ProjectionPursuitResult method) discover_prediction_labels() (in module dendros)

discover_proposal_files() (in module dendros) display_label (dendros.ModelParameter property) dodelson_schneider_factor() (in module dendros) drift (dendros.EnsembleDriftResult attribute) dtype (dendros._collection.DatasetProxy property)

E

effective_sample_size() (dendros.MCMCRun method) (in module dendros) eigenvalues (dendros.ProjectionPursuitResult attribute) eigenvectors (dendros.ProjectionPursuitResult attribute)

emit_parameter_files() (in module dendros) ensemble_drift() (dendros.MCMCRun method) (in module dendros) EnsembleDriftResult (class in dendros) eval_time (dendros.Chain attribute)

F

factors() (dendros.InflationResult method) files (dendros.Collection property)

fisher_matrix() (in module dendros) fisher_weights() (in module dendros)

G

gelman_rubin() (dendros.MCMCRun method) (in module dendros)

geweke() (dendros.MCMCRun method) (in module dendros) GroupProxy (class in dendros._collection)

H

hartlap_factor() (in module dendros)

has_chain_index (dendros.PredictionSeries property)

I

index (dendros.OutputMeta attribute) index_prediction_files() (in module dendros)

InflationResult (class in dendros) information_shares() (in module dendros) intercept (dendros.JacobianFit attribute)

J

jacobian (dendros.JacobianFit attribute)

jacobian_from_samples() (in module dendros) JacobianFit (class in dendros)

K

keys() (dendros._collection.GroupProxy method) (dendros.Collection method)

kind (dendros.Likelihood attribute) (dendros.PerturberSpec attribute) (dendros.PriorSpec attribute)

L

label (dendros.ModelParameter attribute) (dendros.PairedPredictions attribute) latex_summary() (dendros.ProjectionPursuitResult method) leaves() (dendros.Likelihood method) LEGACY_SAMPLE_STEP_OFFSET (in module dendros) Likelihood (class in dendros) likelihood (dendros.MCMCConfig attribute) list_analyses() (dendros.Collection method) (dendros.ModelCollection method) (in module dendros) list_outputs() (dendros.Collection method)

list_properties() (dendros.Collection method) log_file_root (dendros.MCMCConfig attribute) LOG_IMPROBABLE (in module dendros) log_likelihood (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PairedPredictions attribute) (dendros.PosteriorSamples attribute) log_likelihood_bins() (in module dendros) log_posterior (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute)

M

mapper (dendros.ModelParameter attribute) max_drift() (dendros.EnsembleDriftResult method) max_steps (dendros.MCMCRun property) maximum_likelihood() (dendros.MCMCRun method) (in module dendros) maximum_posterior() (dendros.MCMCRun method) (in module dendros) MaxResult (class in dendros)

MCMCConfig (class in dendros) MCMCRun (class in dendros) mean (dendros.MVNFit attribute) ModelCollection (class in dendros) ModelParameter (class in dendros) multiplicity (dendros.PairedPredictions attribute) multivariate_normal_fit() (dendros.MCMCRun method) (in module dendros) MVNFit (class in dendros)

N

n_records (dendros.PredictionSet property) n_samples (dendros.JacobianFit attribute) name (dendros._collection.DatasetProxy property) (dendros._collection.GroupProxy property) (dendros.ModelParameter attribute) (dendros.OutputMeta attribute)

ndim (dendros._collection.DatasetProxy property) nearest_positive_definite() (in module dendros) negative_binomial_shape() (in module dendros) nonlinearity (dendros.JacobianFit property)

O

open_mcmc() (in module dendros) open_models() (in module dendros) open_outputs() (in module dendros) optimal (dendros.InflationResult attribute) option() (dendros.Likelihood method) option_bool() (dendros.Likelihood method) option_float() (dendros.Likelihood method) option_words() (dendros.Likelihood method)

options (dendros.Likelihood attribute) outlier_chains() (dendros.MCMCRun method) (in module dendros) output_root (dendros.Collection property) output_type (dendros.OutputMeta attribute) OutputIndex (class in dendros) OutputMeta (class in dendros) outputs (dendros.Collection property)

P

paired() (dendros.PredictionSet method) PairedPredictions (class in dendros) parameter_covariances() (in module dendros) parameter_labels (dendros.ProjectionPursuitResult attribute) parameter_map (dendros.Likelihood attribute) parameter_names (dendros.EnsembleDriftResult attribute) (dendros.InflationResult attribute) (dendros.MaxResult attribute) (dendros.MCMCConfig property) (dendros.MVNFit attribute) (dendros.PairedPredictions attribute) (dendros.PosteriorSamples attribute) (dendros.ProjectionPursuitResult attribute) (dendros.RhatResult attribute) parameters (dendros.MCMCConfig attribute) (dendros.MCMCRun property) params (dendros.PerturberSpec attribute) (dendros.PriorSpec attribute) parse_mcmc_config() (in module dendros) path (dendros.Chain attribute) (dendros.OutputMeta attribute) (dendros.PredictionSeries attribute) (dendros.ProposalSeries attribute)

perturber (dendros.ModelParameter attribute) PerturberSpec (class in dendros) plot_analyses() (dendros.Collection method) (dendros.ModelCollection method) (in module dendros) post_burn() (dendros.ChainSet method) posterior_samples() (dendros.MCMCRun method) (in module dendros) PosteriorSamples (class in dendros) prediction (dendros.PairedPredictions attribute) (dendros.PredictionSeries attribute) prediction_rms (dendros.JacobianFit attribute) PredictionSeries (class in dendros) PredictionSet (class in dendros) prior (dendros.ModelParameter attribute) prior_sigma (dendros.ProjectionPursuitResult attribute) PriorSpec (class in dendros) projection_pursuit() (dendros.MCMCRun method) (in module dendros) ProjectionPursuitResult (class in dendros) ProposalSeries (class in dendros) ProposalSet (class in dendros)

R

R_interval (dendros.RhatResult attribute) read() (dendros._collection.DatasetProxy method) (dendros.Collection method) read_chains() (in module dendros) read_parameter_file() (in module dendros) read_predictions() (in module dendros) read_proposals() (in module dendros) record_chain (dendros.PredictionSeries attribute)

records_by_chain() (dendros.PredictionSet method) redshift (dendros.OutputMeta attribute) rescale_correlation() (in module dendros) residual_rms (dendros.JacobianFit attribute) resolve_parameter_path() (in module dendros) Rhat_c (dendros.RhatResult attribute) Rhat_c_max() (dendros.RhatResult method) RhatResult (class in dendros)

S

SAMPLE_STEP_OFFSETS (in module dendros) sandwich (dendros.InflationResult attribute) scale_factor (dendros.OutputMeta attribute) sfh_collapse_metallicities() (in module dendros) sfh_times() (in module dendros) shape (dendros._collection.DatasetProxy property) shrink_to_diagonal() (in module dendros) sigma() (dendros.InflationResult method) sigma_post (dendros.EnsembleDriftResult attribute) simulation_kind (dendros.MCMCConfig attribute) size (dendros._collection.DatasetProxy property) state (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PairedPredictions attribute) (dendros.PosteriorSamples attribute) (dendros.ProposalSeries attribute)

state_indices_for() (dendros.MCMCConfig method) step (dendros.Chain attribute) (dendros.MaxResult attribute) (dendros.PosteriorSamples attribute) (dendros.PredictionSeries attribute) (dendros.ProposalSeries attribute) step_offset() (dendros.PredictionSet method) steps (dendros.RhatResult attribute)

T

table() (dendros.OutputIndex method) time (dendros.OutputMeta attribute)

to_correlation() (in module dendros) trace_galaxy_history() (in module dendros) trace_history() (dendros.Collection method)

V

validate_completion() (dendros.Collection method)

velocity (dendros.Chain attribute) volume_factor() (dendros.InflationResult method)

W

worst_parameter() (dendros.EnsembleDriftResult method) write_parameter_file() (dendros.MCMCRun method)

write_parameter_file_to() (in module dendros) write_parameter_files() (dendros.MCMCRun method) write_reparameterization_config() (dendros.MVNFit method)